Yes, but also no.
The hangar and flight deck are generically big enough for a Cyclone, but in a bid to save money on the AOPS project, there was a deliberate effort not to spend the money required to integrate Cyclone (remember the time period when this project commenced).
Now, there is no real way to maintain a Cyclone onboard; no way to store or load torpedos; and certainly none of the esoteric computer networks that the Cyclone require to operate daily. Oh, and not enough JP5 storage to be useful.
All of that can be fixed. Bring money.